Blog Archives
Blog Archives

Express contains transcript level expression data obtained from 21 lens and 35 retina RNA-Seq mouse samples. We downloaded the raw datasets, aligned them to reference genome and quantified transcript level expression for known and novel transcripts. When then downloaded the …

Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple developmental stages in eye tissues in mouse Read more »

Eye Splicer is a genome browser powered by Biodalliance JavaScript library that lets you explore alternative splicing events across different developmental stages in lens from mouse samples. Eye Splicer contains the most abundant alternative splicing events, skipped exons and retained introns, …

Eye Splicer: Explore alternative splicing events across different developmental stages in lens from mouse samples Read more »

ExSurv is a web resource for studying the survival contributions of exons across human cancers using RNA-seq data. ExSurv is the first web server which provides exon level survival significance by using the RNA-seq expression datasets and the clinical metadata …

ExSurv: A web resource for prognostic analyses of exons across human cancers using clinical transcriptomes Read more »

Below is a proposed outline of the units which will comprise of video and accompanying presentation slides along with lab activities. Unit 1: Introduction and overview of genomics and bioinformatics, including career paths and opportunities in the broader fields of …

Developing Units to Train High School Teachers in Bioinformatics, Genomics and Systems Biology Read more »

Credit Hours: 3 Day/Time: Mondays, 6–8:30 pm Location: IT 271, 535 West Michigan Street, Indianapolis, IN 46202 [map] May have some guest lectures, not necessarily in the same room and time First Class: Website: Instructor: Sarath Chandra Janga, Ph.D., Assistant …

Computational Approaches for Analysing High-throughput Data in Biology (I590) Read more »

Seten is a tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles. Seten is a web-based as well as a command line tool which can identify and compare processes, phenotypes …

Seten: Gene Set Enrichment on CLIP-seq RNA-binding Protein Binding Signals Datasets Read more »