Blog Archives

Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple developmental stages in eye tissues in mouse

Express contains transcript level expression data obtained from 21 lens and 35 retina RNA-Seq mouse samples. We downloaded the raw datasets, aligned them to reference genome and quantified transcript level expression for known and novel transcripts. When then downloaded the

Posted in Softwares

Eye Splicer: Explore alternative splicing events across different developmental stages in lens from mouse samples

Eye Splicer is a genome browser powered by Biodalliance JavaScript library that lets you explore alternative splicing events across different developmental stages in lens from mouse samples. Eye Splicer contains the most abundant alternative splicing events, skipped exons and retained introns,

Posted in Softwares

ExSurv: A web resource for prognostic analyses of exons across human cancers using clinical transcriptomes

ExSurv is a web resource for studying the survival contributions of exons across human cancers using RNA-seq data. ExSurv is the first web server which provides exon level survival significance by using the RNA-seq expression datasets and the clinical metadata

Posted in Softwares

Developing Units to Train High School Teachers in Bioinformatics, Genomics and Systems Biology

Below is a proposed outline of the units which will comprise of video and accompanying presentation slides along with lab activities. Unit 1: Introduction and overview of genomics and bioinformatics, including career paths and opportunities in the broader fields of

Posted in High School, Teaching

Programming for Science Informatics (B573)

Credit Hours: 3 Day/Time: Tuesdays, 6–8:40 pm Location: IT 270, 535 West Michigan Street, Indianapolis, IN 46202 [map] May have some guest lectures, not necessarily in the same room and time First Class: Website: Instructor: Sarath Chandra Janga, Ph.D., Assistant

Posted in Fall, Graduate, Teaching

Translational Bioinformatics Applications (B656)

Credit Hours: 3 Day/Time: Location: WK 321, Walker Plaza Building, 719 Indiana Avenue, Indianapolis, IN 46202 [map] May have some guest lectures, not necessarily in the same room and time First Class: Website: Instructor: Sarath Chandra Janga, Ph.D., Assistant Professor,

Posted in Graduate, Spring, Teaching

Computational Approaches for Analysing High-throughput Data in Biology (I590)

Credit Hours: 3 Day/Time: Mondays, 6–8:30 pm Location: IT 271, 535 West Michigan Street, Indianapolis, IN 46202 [map] May have some guest lectures, not necessarily in the same room and time First Class: Website: Instructor: Sarath Chandra Janga, Ph.D., Assistant

Posted in Graduate, Spring, Teaching

Next Generation Genomic Data Analytics (B636)

Credit Hours: 3 Day/Time: Thursdays, 6–8:40 pm Location: WK 321, Walker Plaza Building, 719 Indiana Avenue, Indianapolis, IN 46202 [map] May have some guest lectures, not necessarily in the same room and time First Class: August 27th, 2015 Website: Instructor:

Posted in Fall, Graduate, Teaching

Seten: Gene Set Enrichment on CLIP-seq RNA-binding Protein Binding Signals Datasets

Seten is a tool for systematic identification and comparison of processes, phenotypes and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles. Seten is a web-based as well as a command line tool which can identify and compare processes, phenotypes

Posted in Softwares

Operon Prediction for Bacterial Genomes DB (OperomeDB)

In prokaryotic organisms, a substantial fraction of adjacent genes are related functionally and most of these are organized into operons. Operons are a group of co-directionally organized genes in prokaryotic genomes with the presence of a common promoter and terminator.

Posted in Softwares

Contact

School of Informatics and Computing
Walker Plaza Building
719 Indiana Ave Ste 319
Indianapolis,
Indiana 46202, USA
email: jangalab@iupui.edu
phone: +1-317-278-4147
fax: +1-317-278-9201

News

Lab student among Elite 50 of IUPUI

Janga lab graduate PhD student in Bioinformatics, Swapna Vidhur Daulatabad... Read more →

Grant for research on diabetic retinopathy

Janga lab received $25K pilot AI grant from IUPUI AI... Read more →

Indo-U.S. Virtual Networks for COVID-19

Dr. Janga’s lab received the Indo-US covid19 grant to support... Read more →