Blog Archives
Blog Archives

Two abstracts highlighting lab’s work on single molecule sequencing approaches for mapping RNA modifications and structure from graduate PhD students, are invited for oral presentation of their work at Great Lakes Bioinformatics conference 2019 held in Wisconsin, Madison. Both students …

Two single molecule sequencing studies are invited for oral presentation talks at GLBIO’19 conference in Madison, Wisconsin Read more »

Two studies from the lab are accepted as full length papers and invited for oral presentation for the upcoming International Conference on Intelligent Biology and Medicine (ICIBM 2019) in Columbus, Ohio Title: Long non-coding RNA expression levels modulate cell-type specific …

Two studies first authored by graduate master’s students from the lab are accepted for paper presentation at ICIBM’19 conference in Columbus, Ohio Read more »

Dr. Sarath Janga and Dr. Heidi Dvinge are hosting a special session “RNA Sequence to Structure” at Great Lakes Bioinformatics Conference at UW Madison in May 2019. Please see the links below for submission tracks and program details. https://www.iscb.org/glbio2019-special-sessions http://www.iupui.edu/~jangalab/rss_glbio19/

Raja Kadumuri’s work on identification of m5C modification events at single molecule resolution from direct RNA sequencing of human cell lines is invited for an oral presentation at Rustbelt RNA Meeting 2018 in Columbus, Ohio” and link to the rustbelt …

Raja Kadumuri’s work on identification of m5C modification events at single molecule resolution Read more »

Epitomy is a database to integrate epitranscriptome sequencing data for exploring post-transcriptionally modifications of RNAs. Epitomy provides various search options such as searching by modification name, Pubmed ID, coordinates and gene name and is powered by IGV JS genome browser, …

Epitomy: Epitomy is a database which integrates scores of epitranscriptome sequencing datasets for exploring over a dozen types of post-transcriptional modifications on RNA transcripts in the human and mouse genomes Read more »

Lantern is a repository of high quality controlled lncRNA ontology annotations, extracted by mining recent lncRNA literature using a robust NLP based approach. It also houses extensive lncRNA omics annotations like: tissue specific lncRNA expression, RBP interactions, lncRNA-protein co-expression, coding potential, sub-cellular localization and SNPs in …

Lantern: A genome-scale lncRNA ontology annotation extractor and cellular network repository Read more »

SliceIt is a genome-wide database of predicted sgRNAs based on CRISPR/Cas9 system to enable the systematic design of both low (gene or binding site centric) and high-throughput (genome-wide) CRISPR screens to understand the impact of editing the RNA-Binding Proteins’ binding …

SliceIt: SliceIt is a CRISPR/Cas9 guide RNA prediction search engine to facilitate editing the protein-RNA interaction sites in the human genome Read more »