Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple developmental stages in eye tissues in mouse

Express contains transcript level expression data obtained from 21 lens and 35 retina RNA-Seq mouse samples. We downloaded the raw datasets, aligned them to reference genome and quantified transcript level expression for known and novel transcripts. When then downloaded the reference gene and transcript information and organized them along with the expression data in a MySQL database. We finally developed a PHP backend to interact with the database and a frontend to interact with the user and to visualize the query results.

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Posted in Softwares

Contact

School of Informatics and Computing
Walker Plaza Building
719 Indiana Ave Ste 319
Indianapolis,
Indiana 46202, USA
email: jangalab@iupui.edu
phone: +1-317-278-4147
fax: +1-317-278-9201

News

Sarath Janga has been named as a standing member of NIH’s Molecular Neurogenetics Study Section

The National Institutes of Health has selected Associate Professor Sarath... Read more →

Lab student among Elite 50 of IUPUI

Janga lab graduate PhD student in Bioinformatics, Swapna Vidhur Daulatabad... Read more →

Grant for research on diabetic retinopathy

Janga lab received $25K pilot AI grant from IUPUI AI... Read more →

Indo-U.S. Virtual Networks for COVID-19

Dr. Janga’s lab received the Indo-US covid19 grant to support... Read more →